rs29961489 SNP Detail

Summary

• ID
  rs29961489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103832310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGGAGGCA GAGGCAGGCG GATCTCTGAG TTCGAGCCAG
  CCTGGTCTAC AGAGTGAGTT CCAGGAAACC CTGTCTTGAA AAACCAAACA ATAACAACAA
  Y
  GACAAACTTC TCTCACAGGA AGACATTTCT AACTATCATG ACCTTTGTGG AACAGGATCT
  GGTGTGAGTC ACTCATACTC TGGGAGGAAA GATAGGAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45381619	mCV23245472	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss147141848	ENSMUSSNP4893977	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		C
ss320443517	CHEV_2_103842122	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29961489					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103832310 () rs orientation: forward

Symbol	Name	Function Class
4931422A03Rik	RIKEN cDNA 4931422A03 gene	Intron
Cpgi11988	CpG island 11988	1395 bp proximal
Rr397165	regulatory region 397165	418 bp downstream
Rr562001	regulatory region 562001	592 bp distal
Rr562002	regulatory region 562002	666 bp distal
Rr562003	regulatory region 562003	703 bp proximal
Rr562004	regulatory region 562004	955 bp proximal
Rr562005	regulatory region 562005	1014 bp proximal