rs29960628 SNP Detail

Summary

• ID
  rs29960628
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152661283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CACATTCTTT TCCTAGTTCC CTCTCTTGTC ACTGGCTTCC TTGATGCCAT AAGATAAGCA
  ACTCTGCTTC ACCATTTATG GGCCATAAAG TTCTGCCTCA CCACTCATAA GTCAGGACAA
  TGGAGCCAAG GGCAATGAAT TGAAAGCTTC GAAACAGTGA GCTAAAATGT CTGGGAGCTG
  AGTGGACAGA CAGATAGATG ATCACATAGA CTGATTCAAA GCGCAAGGCA ACTAGCCAGT
  TCCATGGTGT GAAGCATTGA GACAGACTGC CAACAGAAAG CCTGTAGTCT CACTCACCAC
  W
  TGGTGTCCCC ATCCAAGGCA TTCATTAGCA TTTACTTATT TAAACTAAAT GAATCCATCT
  TGAGGAGAGG CAGGCAGCAG CACAAGTAAG TTAGGGGTAA CTAGCCAGAC ACAGGAGCAG
  GGCATGTTGG GGTAGGAAGT ATAGGAAGGA GGATCCGGAG TACAAGGAGA TCCTCAGCAA
  CATAATGAAA CTGAGGGCAG CAGCCTGGGA TACAGGAGAC TCTCTCAAAA GCTACCTGCC
  CCCAAACAAA GCAAAACAAA ATAAACTCCA GGCAAACAGA CTTGAAGTCT GACAGTCACT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45381805	mCV27575781	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29960628					SNP	T	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152661283 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l1	BCL2-like 1			Intron
				Noncoding-Transcript-Variant
Rr1128	regulatory region 1128			1166 bp distal
Rr374094	regulatory region 374094			327 bp upstream
Rr567481	regulatory region 567481			349 bp distal
Rr567482	regulatory region 567482			374 bp proximal
Tssr20836	transcription start site region 20836			1905 bp upstream