rs29960494 SNP Detail

Summary

• ID
  rs29960494
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40140921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAAAAGA GAGGGATGAG
  GAGTATGTTT GCGGCACTCA GGACACTCGG GGTAAAGAAT GTGTCCTTAA ACTATAGCTT
  CTGTTGTTCG GCTCTCCTTT CACAAATACT AACACATCTC CTCACTAGGC CACTGCAGAC
  AGGATGTCTC ACCTGGGAAG TGAGCAAACA TCAAAGGGTA TTGGTGTTAG GGATGTCACA
  Y
  TCATCCTACC TCATGTCTCT TTCCTGCCTC CTACCAGGTA ATCTAAGAGC CTGGCTGAAG
  GTTCTTGCCA TGAAATACCC CCATTCTCAA AGGCATAAGA AGAGACTCTG TCCTCCACTG
  TGAGAGCATT GGTTTTATTC AGACTCCACC ATGCCATTGG TGTCCAGTGC TGCAGTTTGA
  ACTTTTCTTG GAGGTCTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49586350	NES12859562	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29960494					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49586350	NES12859562	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40140921 () rs orientation: forward

Symbol	Name	Function Class
Rr575791	regulatory region 575791	339 bp proximal