rs29960391 SNP Detail

Summary

• ID
  rs29960391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72616427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAATAGGAAG CCATGAACTT TCGCAAGCCA GGCCACAAAT GTTTGCCCTA CAGTATTGAT
  GCAGTCTGCT GGAGGGTTGT AGTCCAGGCT GCCTGAAGGC CAGTCATGGG TCGGGCCCTG
  GTTTAGGCCC TCTCTAGGCA TATGCTCCCA TAGTACAATG GTCCTGTGAA ATAAATCCTG
  TGATCATGCC AACTGACACA AGAAGAAACC AAAACTAGCA TGAGGAAAGG TGGTTGCCCA
  ACTAATTCTC CCCGGCTCTC TCTATAGAAG TGCCTCTGTT GCTGACTGAC TCCAGCAAGC
  Y
  TGAACAAAGG TCTTCTTCCA CCAAAGCCCT CTTGACTCTT TACCCACAAC TCCACAGCCG
  CCATCTGGGA GTGCTGGTCA ACATCTGTTG AATAGGAAAG TCTGACCAGG CTTGAGGTCA
  CAGGGAGCCA GAGCTTCAGG GCCTCTGAGC ATCCTCTGCT CTAAGGCACA GCAAGACCTA
  GTCTACAGGG AAGCTCTGCT AGCTTGCCTT CCCACTTTCT GCTTTTAATC TTATTTACAA
  AAAAAAAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG ACTTATTTGA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45381909	mCV23794842	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29960391					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72616427 () rs orientation: forward

Symbol	Name	Function Class
6430710C18Rik	RIKEN cDNA 6430710C18 gene	within coordinates
Gm39848	predicted gene, 39848	1101 bp downstream
Rr559035	regulatory region 559035	within coordinates