rs29959972 SNP Detail

Summary

• ID
  rs29959972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:19529143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGT ATGTATTTAT AAAAGTAAAG
  Y
  ATGAATCTTT CTTCAGAATT ATAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39135610	mCV23260060	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		C
ss52626589	NES15515276	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	C	C	C		C	C	T	C		C	C	T	C		T
ss148743658	ENSMUSSNP2915121	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
ss324278111	CHEV_13_19436842	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29959972					SNP	T	T	T	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626589	NES15515276	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19529143 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	Intron
Tssr118550	transcription start site region 118550	1514 bp downstream
Tssr118551	transcription start site region 118551	740 bp downstream
Tssr118552	transcription start site region 118552	983 bp upstream
Tssr121589	transcription start site region 121589	1707 bp upstream
Tssr121590	transcription start site region 121590	625 bp upstream
Tssr121591	transcription start site region 121591	216 bp downstream
Tssr121592	transcription start site region 121592	796 bp downstream