rs29959868 SNP Detail

Summary

• ID
  rs29959868
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164495545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGTGATCTT ACTTTAACAC CTTAGCCAGC CCCCTGAAAG GTTCTCTGGA TCCTGGTGAT
  GCCCAATGCC CTTCCGTTGC ACACTGCTGG TATTCTTAAC CATCCCAGAG AAGGGGAGCA
  AGGACACCCC CAACCCATAT CACAAGGATG ATGCTGACAC AACTCCAGGC ACAAATTACC
  TAAGCCAGCC GTAAAACTCA TGCTTTACAC TCCCTTGTCT ACAGGTGACA GCAGACTGAC
  AGCTCTTTTG TCCAAATTTG GAACGGAGCA CAAAAGAACA AAACAAAAAA CAAAACAAAA
  M
  AAAAAAAACA GAGTTAGGGT TGACTTTTGT GGTAGCAGAG TTTTGGGCTC AGTTCAGGAG
  CTACGTGTCA GCTCACAGAC TATTTCTTTG GCACTCTCTC AAGTGAAAGC ACTGGGCTGT
  GTTGATGTAG CCGGCACCTC TGTGTGGGCT GGGGACACTG TGTGTCTTCC ACAGCTTTAT
  CTCTGATCCA GAACTCCTCG GCCACTGGGT ACAGAGTCTT TCTGAATCAT CCAAGCTCAC
  CTACAGGAAG GGAGTCAAAG GCACCTGCCT CTGTTGGTAG TGATGTTTTT TGAGAAATGG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45379765	mCV23183375	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29959868					SNP	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164495545 () rs orientation: forward

Symbol	Name	Function Class
Rr569671	regulatory region 569671	644 bp distal
Tssr21622	transcription start site region 21622	201 bp upstream
Tssr21623	transcription start site region 21623	215 bp upstream
Tssr21624	transcription start site region 21624	270 bp upstream
Tssr21625	transcription start site region 21625	352 bp upstream
Tssr27516	transcription start site region 27516	1302 bp downstream
Tssr27517	transcription start site region 27517	1340 bp downstream
Wfdc9	WAP four-disulfide core domain 9	within coordinates