rs29959164 SNP Detail

Summary

• ID
  rs29959164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101865225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCTGAACCTA AGCACCCCAA TGTGTAAAGA GAAGGCAAGT TATATGGACG GCTATGAGTC
  AGACAAGGCG CAAGTGGGCG ACCTAATTAA GAAGCCAGCG TGGTGACTCA GATGTGGTTA
  GAAGTCGAGG CACCGTCACC AATTTATTAT CTCAATGCTG CTGTTGCTAC TGCTACTTCT
  GATGTGAGGC CATAGAGCAC GTCCGAAGCC TAAGCATCTC CAGGCAAACG GGGACGTGGC
  CTGAGTTTAT GGCATAATAA GGCATCTAAG GCATCTGGCC TTATGCTTTT TCTTTTCTTT
  Y
  TTTTTTTTTT TTTTTTTTTT TTTGGTTTTT TGAAACAGGG TTTCTCTGTA TAGCCCTGGC
  TGGCTGTCCT GAAACTCACT TTGTAGACCA AGCTGGTCTT GAACTCAGAA ATCGGCCTGT
  CTCTGCCTCC CAAGTGCTGG GATTAAAGGC ACGAGCCACC ACCGCCTGGC CCTGGCCTTA
  TTCTTGAATT CAAGATTGTT GTTAAGCTTT TTATTCTCAT AATAACTGAG GCTAGTTCAC
  TTTTCTCTTA CATATGGGGA AACGAAGGCA CAGAGAGAGA TATGAAAGGA ACTCTCCCAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45380420	mCV25361133	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29959164					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101865225 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr561613	regulatory region 561613	849 bp distal
Rr561614	regulatory region 561614	85 bp distal
Rr561615	regulatory region 561615	1541 bp proximal