rs29959109 SNP Detail

Summary

• ID
  rs29959109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:77194633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCC GAAAGCCCTG TAACAGGAAC
  R
  CACTCACCCC CACGCTGTAG AAGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39135597	mCV24822567	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	A
ss144698286	ENSMUSSNP6810854	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss324446866	CHEV_13_77185775	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29959109					SNP	A	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:77194633 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr482873	regulatory region 482873			748 bp distal
Rr482874	regulatory region 482874			1840 bp proximal
Slf1	SMC5-SMC6 complex localization factor 1			Intron
				Splice-Site
Tssr123272	transcription start site region 123272			891 bp downstream
Tssr123273	transcription start site region 123273			1111 bp downstream