rs29958701 SNP Detail

Summary

• ID
  rs29958701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65810820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAGCTGAAAT AATACAGTGG TGAATAGAAC ATCAGTTCTG GCCTGCTTAT GCAATGAATC
  CTCCAAAGTT TCTCTCAACA CATACTGTAT ATATTACAAG TAAAAATACC CAGTTTTATA
  AATATAGGTA AAAATGAATA TCTATATTCA GAAAAGAAGT GTTATGAAAT AAAGCTTTAG
  ATTTGACCAG CGTTCGATGG ATGAGGTTAG AAGCAATCAT TAGTCTATTT TGAAGTCAGC
  ATTTATTTTT AACTTTTACA TTTAGCAGGG CGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  Y
  GTGTGCGTGC GCGCGCGCGC CATGGTGTGG GAGTGGACAA CTTGTGGAAG TTGGTTCTCT
  CCATTTCAAA CTCAGCTCAT TAGGCTTGGC AGCAGAAACA TTTACTCACT GCCTTGTTAC
  ATTTATCTGT CTGTCTGTCT GTCTGTCTGT CTGTCTGTCT GTTTATGAGA CAGACTCAGA
  ATCATGGGGA TGGGTGTTTC ACTTGGGGAT TGGAGGATGG GTGGTGTAAG CTTCAGGTGG
  CCTGGAGGAT CTGCCCCCTC TGTCTAATCC AATCAGCCTC CTGCTTATCA GCTCACCCAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss39632447	mCV23468283	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs29958701					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65810820 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D18Mit161	DNA segment, Chr 18, Massachusetts Institute of Technology 161			within coordinates
Rr539588	regulatory region 539588			1494 bp proximal
Zfp532	zinc finger protein 532			Intron
				Noncoding-Transcript-Variant