rs29957029 SNP Detail

Summary

• ID
  rs29957029
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40193554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGAAGAGA CTCAGAGACC ATTAGATACA TCGGAAGTCT
  TGAGGAAAGA AACAATTTCT TCAATAACAA AGACTGTTAT GCTTTTAAAT AACAAGCATG
  R
  AGGCAATTAT TTTTGCAGAG AATCTGACTG TATTGCTGTC ATACCTACAA AAATCTATTA
  TTATCCTGTA TTTGTAGAAA AGCCGTCCTG TCCAACCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45532993	mCV24787955	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A		G
ss49586115	NES12856942	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G	A		A	G	A	A		A	A	A	A		A
ss134857628	ENSMUSSNP1444892	ENSEMBL	ENSEMBL_Sanger	f	SNP			A							G
ss320727553	CHEV_3_40038327	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29957029					SNP	G	G	A	A	G	G	A	A	A	G	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49586115	NES12856942	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40193554 () rs orientation: forward

Symbol	Name	Function Class
Rr575799	regulatory region 575799	413 bp distal