rs29956699 SNP Detail

Summary

• ID
  rs29956699
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165439380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGAGTCT TGTTCCAGAT
  GGATAAATTG ATAAAATGCT AGCTGCTGTC GGGAGAGTGG AAAAGCCCAC AGTAAAACGG
  GTCTGCGGCG TAGCCGGCCA CTTTCAGAAT TGGGTTGAAT ACGCTGTGGA GATTCTGGCA
  GTTTGAAAAA CCTTATACAC AGTCCAGGCA CATCCACTTA AGATGTTTCC CCCACGACAA
  K
  ATGACTCCAT CCCACAAAGA AGAAATCATT TCCTTATTTT TTTTTCAGCC TTTTTTCCCA
  AAGATAATTT GTGCCGGGAG TAGACCAGGA CTAAGCAGCC AGCCGTCCAA CTGTCACCAG
  CGCAAGCTGA GCTCAGGACG AGAACTCTTT CTCTGTCCCC ACCACCATCA CCAGATGTGT
  GTTGGGTGTC CTCAGCTGCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss45379464	mCV23743220	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss148241346	ENSMUSSNP1534735	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss320608379	CHEV_2_165422960	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs29956699					SNP	G	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165439380 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	1625 bp distal
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569956	regulatory region 569956	917 bp distal
Rr569959	regulatory region 569959	89 bp proximal
Tssr21728	transcription start site region 21728	1288 bp downstream