rs29956449 SNP Detail

Summary

• ID
  rs29956449
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127082921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AATTCTGTAG CCTTCCCTCC CAGGAGGCAG CACTGGGGTG GTTAATATAC ACCAGGTAGA
  TTCGACTTTT GTCTCCTTAT CACAATCTCA GACATGGTAT TTCAATGTCT GCTTTCTGTT
  CTCTGGGACA CCATGAACAA CATGAATAAT GCTGAAAGGT GATTCATTTT CCCCTCGGCC
  AGCCGTTTTA AAATGATCTC AATACCCCAC TCCCCCTTCA GAAAACTAAA AGCACAGCCC
  CCAAAGCTTT TATTACCTAG GTTATATTCA TTGATACTTG TTACATTAAA AATTAAGGCA
  R
  TTTGTTTTTT AAAAAAAAAA ACTTCATTAA CATATTTTAA GAAAAATAAA TCCTGGGAGA
  AGAGTAGCAT GGTACAGTGT TATAATCACT TTACGTCTAG CTTAAGAGAA GCCAGTTAGC
  GTGTCTGCTC AGTCTGTTGT ATGGTTGAGC TGAGCATGTC AACTTCAGGT TGGGAAAGAA
  GAGTTTCCAA ATCACTGTGG CTGTCCTTAG ATACTACTGT ATGGTACTGT ATGTGGAAGT
  TTCCTAAAGG CAGTGTAGGC TCCTCAGCTG TACCCATGCA TCCTGTACTG TTAAAACCAC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45379990	mCV22836082	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147524226	ENSMUSSNP1389909	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29956449					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127082921 () rs orientation: forward

Symbol	Name	Function Class
Ciao1	cytosolic iron-sulfur protein assembly 1	mRNA-UTR
Rr564475	regulatory region 564475	584 bp distal
Snrnp200	small nuclear ribonucleoprotein 200 (U5)	550 bp downstream