rs29953799 SNP Detail

Summary

• ID
  rs29953799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:142441909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAGGTTT TCCTCTGTCT
  ACACCTGCTC CTTGCTCTGC ACACAAAGGG GAAATAGAAG CAAAATTCTC CTTCCCCACC
  CAATGTACCT GTTCTCAAGT ACAAGTTTTC AGACTCTGCC ATTCATGCTG GACATAGAAT
  CCAATGTCTC CAATATCCTG GAAGTTCAAA GTCAAGTTCA GAAATCAGAT TAATGCTAGA
  Y
  ACCACTTTCA TCTCCGCACA TAGCCACTTA CAGATTATAC ACAGCTATGT ATTAATATAG
  CCCACAATAC ATTAGTTGAA GAGTCAAGGA TCCAGGTGTG ACTGTAGGAA CGACGGAGTG
  AAAACACAGA TCTGTTACCA TCATTGTCTT TGCTCTAATT CTCTTGACCT TAAAATGCCA
  CTATTGCTTG TGCAGTGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45379690	mCV23135099	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss147736803	ENSMUSSNP4173884	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss320531963	CHEV_2_142425725	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29953799					SNP	C	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:142441909 () rs orientation: forward

Symbol	Name	Function Class
Rr566224	regulatory region 566224	184 bp distal