rs29948653 SNP Detail

Summary

• ID
  rs29948653
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39274294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGCTGAAC TCTGCTGATC
  CAACACGCAG GCACTGTGAA GAAAATGCGT TGCTATTTTA GTGGTTCTGT TTCTAAGCAA
  TGCTTTTTCA GCACAGGTCT ACAAAATAGG ACAGATTCTT CACTCAGTGT AAGGGACAAA
  ACAAAAGAGG GCCACGCCCC TTCCTCGGGT CTTGCCTTCA TTGTTCAGTC CTGAGCAGCC
  Y
  TTGTGATGTA AGAGACTGGG AACAGAAAGC TTTGACCAGA TCAAAAGCTG AGTGAGTTTA
  GGAAAGGGAG ACTTCCAGTG ACTGGGGCTT GGACTACAGC AAATGAATCT AAGATTAGAT
  TTGGAGCCCC AGGTCCTCGG ACAGTCCCTT GCCCGCTTGC TTTCCCATCC CTGCCTCTTT
  CACAAGGAAA GAAATAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49583709	NES12873124	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29948653					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49583709	NES12873124	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39274294 () rs orientation: forward

Symbol	Name	Function Class
Rr575743	regulatory region 575743	within coordinates
Rr575744	regulatory region 575744	756 bp proximal