rs29948652 SNP Detail

Summary

• ID
  rs29948652
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39274337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCGTTGC TATTTTAGTG
  GTTCTGTTTC TAAGCAATGC TTTTTCAGCA CAGGTCTACA AAATAGGACA GATTCTTCAC
  TCAGTGTAAG GGACAAAACA AAAGAGGGCC ACGCCCCTTC CTCGGGTCTT GCCTTCATTG
  TTCAGTCCTG AGCAGCCCTT GTGATGTAAG AGACTGGGAA CAGAAAGCTT TGACCAGATC
  R
  AAAGCTGAGT GAGTTTAGGA AAGGGAGACT TCCAGTGACT GGGGCTTGGA CTACAGCAAA
  TGAATCTAAG ATTAGATTTG GAGCCCCAGG TCCTCGGACA GTCCCTTGCC CGCTTGCTTT
  CCCATCCCTG CCTCTTTCAC AAGGAAAGAA ATAACAACTT TCTCTTCCTG TTAGTCTAGG
  TGCTTAAAAG TAACACATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49583708	NES12873125	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29948652					SNP	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49583708	NES12873125	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39274337 () rs orientation: forward

Symbol	Name	Function Class
Rr575743	regulatory region 575743	within coordinates
Rr575744	regulatory region 575744	713 bp proximal