rs29948649 SNP Detail

Summary

• ID
  rs29948649
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39274704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTTAGTC TAGGTGCTTA
  AAAGTAACAC ATTCCAGCAA GCAGGAGGGG GAGGCTCGAA GCAGCGGGAC ACAGTAAATC
  TTGCCAAGGG GCCAGCATTT CCTGGTTCAC AATTGCAGGA AAGGCCTTGC TCCCTTATCA
  AGGGGACCTG GATGCTTTCA TAGGCAATTG TTTTAAAAGC TAAACAACAT TAAATATTGT
  R
  TGTGGTGCGC AAGACTTGTG GGGAGGAAGC CCCGCTCCAG ATGGATCGGA CAATGGTTTT
  GTCTGATGCT TTGTTCTTTT TTTTATTGGT GAAAAAGAAA AATTCGGGGT AATGTCTGTA
  TGCAACTTTG CTTTCAGTAA AGTTTCTGCT GTTCTAGAAA ACAATAGCGG CTGGAACAAT
  GGACGTTTCC TTTTCAATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49583705	NES12873129	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29948649					SNP	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49583705	NES12873129	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39274704 () rs orientation: forward

Symbol	Name	Function Class
Rr575743	regulatory region 575743	within coordinates
Rr575744	regulatory region 575744	346 bp proximal