rs29948646 SNP Detail

Summary

• ID
  rs29948646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39274914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGACTTGT GGGGAGGAAG
  CCCCGCTCCA GATGGATCGG ACAATGGTTT TGTCTGATGC TTTGTTCTTT TTTTTATTGG
  TGAAAAAGAA AAATTCGGGG TAATGTCTGT ATGCAACTTT GCTTTCAGTA AAGTTTCTGC
  TGTTCTAGAA AACAATAGCG GCTGGAACAA TGGACGTTTC CTTTTCAATA AGTGCTTCCT
  Y
  GAAACTGTAC TGAGAGAAAA TAGACACAGG TTAGCAGCAA TGGAATGGCA GTCCCTCTGA
  GGAAACCAGC CCTAATGAAG CACATGGGCT CCACAAGCTC CTGAGAAAGT GAGGAAATGT
  CTTACTGGGT GGGGACAGAC ACCCCCTAAT GGCCAGGGAA GACAGTGAGT GTCAAACTAT
  TCCTATCAGA GTGTATAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49583702	NES12873132	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29948646					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49583702	NES12873132	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39274914 () rs orientation: forward

Symbol	Name	Function Class
Rr575743	regulatory region 575743	within coordinates
Rr575744	regulatory region 575744	136 bp proximal