rs29948404 SNP Detail

Summary

• ID
  rs29948404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36668245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACAACCCC CCATAAACTG
  TATTTATGTA GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTTTTG GAGGTCATGT CGAAGTCTGA GTACAACTTT CAGGAGTCAT TCTTTCCACC
  CTGAGGATCG TTGGGCTTGG TGGCAACCTG CCCATTACCT GCTGAGCCAT CTTGCCAATC
  Y
  TCTTCCTCCC ATTCTATAAC TACACTCCCC TCCCCCAGGG CCACAGTACA AGACTCTGAG
  TCAAACAAAT CAAATCGAAA CATAATAATA ATACCTAAGA AATGAGTTTG AAACAATAGA
  ATAAGCGGAG AAACTAGACA GTAACGACAC AGAAAATCTG AGTAAACTCG GGAGGCAGAG
  GCAGGCGGAT TTCTGAGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46899264	NES10812818	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29948404					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46899264	NES10812818	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36668245 () rs orientation: forward

Symbol	Name	Function Class
Bbs7	Bardet-Biedl syndrome 7	619 bp upstream
Rr575383	regulatory region 575383	822 bp distal
Rr575384	regulatory region 575384	129 bp distal
Rr575385	regulatory region 575385	647 bp distal
Tssr28874	transcription start site region 28874	610 bp downstream
Tssr33039	transcription start site region 33039	729 bp upstream
Tssr33040	transcription start site region 33040	699 bp upstream
Tssr33041	transcription start site region 33041	667 bp upstream
Tssr33042	transcription start site region 33042	625 bp upstream
Tssr33043	transcription start site region 33043	596 bp upstream