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rs29947551 SNP Detail
Summary
  • ID
    rs29947551
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:36667606 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CGCCC TCTCCCGGGG AGCTGCACCA
    R
    GAAAGGGGGG CGGAGGGAAC GGTCC                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
SM/J
WSB/EiJ
ss46899261 NES10812878 PERLEGEN MM_PANEL2 f SNP A A G A A G G G A G A
ss134784828 ENSMUSSNP6903570 ENSEMBL ENSEMBL_Sanger f SNP A A
ss320703513 CHEV_3_36512379 CHEVERUD SCREENING_POP f SNP A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
SM/J
WSB/EiJ
rs29947551 SNP A A A G A A A G G A G A G A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46899261 NES10812878 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:36667606 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Bbs7 Bardet-Biedl syndrome 7 mRNA-UTR
Cpgi13088 CpG island 13088 within coordinates
Rr575383 regulatory region 575383 183 bp distal
Rr575384 regulatory region 575384 within coordinates
Rr575385 regulatory region 575385 8 bp distal
Tssr28874 transcription start site region 28874 25 bp upstream
Tssr33039 transcription start site region 33039 90 bp upstream
Tssr33040 transcription start site region 33040 60 bp upstream
Tssr33041 transcription start site region 33041 28 bp upstream
Tssr33042 transcription start site region 33042 4 bp downstream
Tssr33043 transcription start site region 33043 32 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory