About   Help   FAQ
rs29947545 SNP Detail
Summary
  • ID
    rs29947545
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:36667499 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TCCCT CGGAGAGCCC ACCACTAGAC
    Y
    GACGAGCCGG CCTGCGTCAG GGCAG                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
ss46899255 NES10812876 PERLEGEN MM_PANEL2 f SNP C C C T C C C T T T C T C
ss134784822 ENSMUSSNP2371869 ENSEMBL ENSEMBL_Sanger f SNP C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
rs29947545 SNP C C C T C C C T T T C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46899255 NES10812876 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:36667499 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Bbs7 Bardet-Biedl syndrome 7 mRNA-UTR
Cpgi13088 CpG island 13088 within coordinates
Rr575383 regulatory region 575383 76 bp distal
Rr575384 regulatory region 575384 within coordinates
Rr575385 regulatory region 575385 78 bp proximal
Tssr28874 transcription start site region 28874 132 bp upstream
Tssr33039 transcription start site region 33039 within coordinates
Tssr33040 transcription start site region 33040 20 bp downstream
Tssr33041 transcription start site region 33041 68 bp downstream
Tssr33042 transcription start site region 33042 111 bp downstream
Tssr33043 transcription start site region 33043 139 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory