TTCATTGAAA TCTGGCTGGT GTGGTCAGGC CCAGTGGGAG TGACAGGGCG GTCGAGACCA CTGGGAGCGG CTGGGACACC CCCAGGACCC GGGCCTGGAG GGACCGGGGC TTCCCCAGGC CCGCGTCCAC CCACGAGGGC GCCCGCCAAT CGGTTTACCT GGAGGTAGTC TGCCCGGCTT AACGTCAGAT CCATGGCGGC S GCACGGAGAG GCGGGACCCG CTGTGGAAGC CTTCCCTCGG AGAGCCCACC ACTAGACTGA CGAGCCGGCC TGCGTCAGGG CAGCGGCGCC CAGCAACGCG GGCTCGACAC GTGACCCATC TTAGCTCACT GTGAAGCCCC GCCCTCTCCC GGGGAGCTGC ACCAGGAAAG GGGGGCGGAG GGAACGGTCC TCAGACGCTG S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46899252 | NES10812875 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | C | C | C | C | C | G | C |
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs29946692 | SNP | C | C | C | C | C | C | C | C | C | C | C | G | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46899252 | NES10812875 | PERLEGEN | MM_PANEL | f | SNP | C/G |
Location: Chr3:36667441 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Bbs7 | Bardet-Biedl syndrome 7 | mRNA-UTR | ||||||
Cpgi13088 | CpG island 13088 | within coordinates | ||||||
Rr575383 | regulatory region 575383 | 18 bp distal | ||||||
Rr575384 | regulatory region 575384 | within coordinates | ||||||
Rr575385 | regulatory region 575385 | 136 bp proximal | ||||||
Tssr28874 | transcription start site region 28874 | 190 bp upstream | ||||||
Tssr33039 | transcription start site region 33039 | 47 bp downstream | ||||||
Tssr33040 | transcription start site region 33040 | 78 bp downstream | ||||||
Tssr33041 | transcription start site region 33041 | 126 bp downstream | ||||||
Tssr33042 | transcription start site region 33042 | 169 bp downstream | ||||||
Tssr33043 | transcription start site region 33043 | 197 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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