rs29946692 SNP Detail

Summary

• ID
  rs29946692
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36667441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATTGAAA TCTGGCTGGT
  GTGGTCAGGC CCAGTGGGAG TGACAGGGCG GTCGAGACCA CTGGGAGCGG CTGGGACACC
  CCCAGGACCC GGGCCTGGAG GGACCGGGGC TTCCCCAGGC CCGCGTCCAC CCACGAGGGC
  GCCCGCCAAT CGGTTTACCT GGAGGTAGTC TGCCCGGCTT AACGTCAGAT CCATGGCGGC
  S
  GCACGGAGAG GCGGGACCCG CTGTGGAAGC CTTCCCTCGG AGAGCCCACC ACTAGACTGA
  CGAGCCGGCC TGCGTCAGGG CAGCGGCGCC CAGCAACGCG GGCTCGACAC GTGACCCATC
  TTAGCTCACT GTGAAGCCCC GCCCTCTCCC GGGGAGCTGC ACCAGGAAAG GGGGGCGGAG
  GGAACGGTCC TCAGACGCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46899252	NES10812875	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29946692					SNP	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46899252	NES10812875	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36667441 () rs orientation: forward

Symbol	Name	Function Class
Bbs7	Bardet-Biedl syndrome 7	mRNA-UTR
Cpgi13088	CpG island 13088	within coordinates
Rr575383	regulatory region 575383	18 bp distal
Rr575384	regulatory region 575384	within coordinates
Rr575385	regulatory region 575385	136 bp proximal
Tssr28874	transcription start site region 28874	190 bp upstream
Tssr33039	transcription start site region 33039	47 bp downstream
Tssr33040	transcription start site region 33040	78 bp downstream
Tssr33041	transcription start site region 33041	126 bp downstream
Tssr33042	transcription start site region 33042	169 bp downstream
Tssr33043	transcription start site region 33043	197 bp downstream