rs29946094 SNP Detail

Summary

• ID
  rs29946094
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36666798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTGACA TCCTAAGATT
  CCAGTGAAAC TGACCATGAC TATTTACAAA AGGCACAGCG AGGAAAAACA GCATGACTTG
  TTCATCAAAG GTGACTGTCA CCAGAACTTA AAAACAACCA ATCATGAGAA AACCTGCTTG
  GTGCATGTAT AACTATTCTG AATTTTTAGG CACGCTGCTA CAGTTTTAAG CAATCCATTT
  W
  GTTTAACATT GTCAAGTGCT TTGAACCATA GCTTGGGGAA GTTGGACTTG GAGATTGTAG
  GTCCTATCCA TCCAAGCTAA AGATGAGAAC CCAAACTGGG AATCACAGAG ATGGTGACTA
  ATTGGACAGA TCCAAGAGAT ATTGTCAGGG TGTAGCTTCC ATAAAATACT AAAGAGAACT
  ATCTGGCCCA ACGCCCTGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss46899234	NES10812934	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A	A		A	A
ss320703503	CHEV_3_36511571	CHEVERUD	SCREENING_POP	f	SNP						T			A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs29946094					SNP	T	A	T	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46899234	NES10812934	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36666798 () rs orientation: forward

Symbol	Name	Function Class
Bbs7	Bardet-Biedl syndrome 7	Intron
Cpgi13088	CpG island 13088	447 bp proximal
Rr575383	regulatory region 575383	within coordinates
Rr575384	regulatory region 575384	626 bp proximal
Rr575385	regulatory region 575385	779 bp proximal
Tssr28874	transcription start site region 28874	833 bp upstream
Tssr33039	transcription start site region 33039	690 bp downstream
Tssr33040	transcription start site region 33040	721 bp downstream
Tssr33041	transcription start site region 33041	769 bp downstream
Tssr33042	transcription start site region 33042	812 bp downstream
Tssr33043	transcription start site region 33043	840 bp downstream