rs29945018 SNP Detail

Summary

• ID
  rs29945018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:36666743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGCCCT TCCTATTAGT
  GATGGGAAAT AGGGGACTTC CGCTGAAATA ACATACCTGC TGACATCCTA AGATTCCAGT
  GAAACTGACC ATGACTATTT ACAAAAGGCA CAGCGAGGAA AAACAGCATG ACTTGTTCAT
  CAAAGGTGAC TGTCACCAGA ACTTAAAAAC AACCAATCAT GAGAAAACCT GCTTGGTGCA
  Y
  GTATAACTAT TCTGAATTTT TAGGCACGCT GCTACAGTTT TAAGCAATCC ATTTAGTTTA
  ACATTGTCAA GTGCTTTGAA CCATAGCTTG GGGAAGTTGG ACTTGGAGAT TGTAGGTCCT
  ATCCATCCAA GCTAAAGATG AGAACCCAAA CTGGGAATCA CAGAGATGGT GACTAATTGG
  ACAGATCCAA GAGATATTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss46899228	NES10812932	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	T	T		T	T
ss320703501	CHEV_3_36511516	CHEVERUD	SCREENING_POP	f	SNP							C			T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs29945018					SNP	C	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46899228	NES10812932	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36666743 () rs orientation: forward

Symbol	Name	Function Class
Bbs7	Bardet-Biedl syndrome 7	Intron
Cpgi13088	CpG island 13088	502 bp proximal
Rr575383	regulatory region 575383	27 bp proximal
Rr575384	regulatory region 575384	681 bp proximal
Rr575385	regulatory region 575385	834 bp proximal
Tssr28874	transcription start site region 28874	888 bp upstream
Tssr33039	transcription start site region 33039	745 bp downstream
Tssr33040	transcription start site region 33040	776 bp downstream
Tssr33041	transcription start site region 33041	824 bp downstream
Tssr33042	transcription start site region 33042	867 bp downstream
Tssr33043	transcription start site region 33043	895 bp downstream