rs29937905 SNP Detail

Summary

• ID
  rs29937905
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39449229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGTTCAC AATGGGCTGT
  AACTCCACTT CCAGAGGATC TGGCACCAAA ATCTTCTAGC TTTCATGGAT AGAATACTCA
  TAAATTCAGG TAAAATGGAT ATAAACTAAA ATAAATCTCT TTTTAAAATT TGGATAATCC
  TGAGGAGGTT TTACATCATT ATTAACCACT CTATATCAAA TCTTAAGTGA TGATACTTCA
  S
  AGGGTTGACA TCACACTGTT CAGCACTGTG ATGCAAAAGT CAGTTCCTCA AGTTTTGGCA
  CCATCTTTGA CCAGTCACAG TGCTAGAAGG AGCCTGTGGG CTTCTTGGCC AGGGTATGTA
  GCAAGGGTGG CGTACCCTGT AGGTAACACT GTTGCTGGAG GTACTGGCAG GTAGGGGTAT
  GCTGGGCTGG TAGTCTTCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45411759	mCV22637915	ABI	CRAMUS_MOUSE	f	SNP		G	C					G
ss49582721	NES12881024	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	G	G	G		G	G	G	G		G	G	G	G
ss134850312	ENSMUSSNP3465409	ENSEMBL	ENSEMBL_Sanger	f	SNP			C										G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29937905					SNP	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49582721	NES12881024	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39449229 () rs orientation: forward

Symbol	Name	Function Class
Rr575754	regulatory region 575754	1994 bp proximal