rs29936999 SNP Detail

Summary

• ID
  rs29936999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39449589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTACTGGCA GGTAGGGGTA
  TGCTGGGCTG GTAGTCTTCC CTATAACTAT CTGGTTTGTA CTGAATTCTC ACAGGCCTAA
  TACAAAGTGA ATACCGTTCC AGAGAGTTGA GACAAGTCAA GAGTCTGGAC ACACTTTAAG
  GGCAGAATAT AGACAACATT CTGATACATT CTCCACATGC AGTGGGGAAA AGCTAGTTTT
  Y
  CTAACTCATC AGAGTAAGTG TGTGAATCGT GGAAGAATTT TCCCCGAATG TTCTTTCTGG
  AAATTGGACC AGTGGATTGG AATATGAGAA AATGAAGGAA AAAAAAAAAA AGCTCTTTGG
  GGTTTACCAA GGTTCAATGA TGCAGCAACT ATCCCAAGTA CATTTGAAAC ATCATCAGGT
  GTATAGTTAG AAAAGAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45509787	mCV22637914	ABI	CRAMUS_MOUSE	f	SNP		C	T			C	C
ss49582715	NES12881030	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C		C	C	C		C	C	C
ss134850316	ENSMUSSNP5315180	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T				C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29936999					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49582715	NES12881030	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39449589 () rs orientation: forward

Symbol	Name	Function Class
Rr575754	regulatory region 575754	1634 bp proximal