rs29929508 SNP Detail

Summary

• ID
  rs29929508
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108450195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTAGCAT TACATCAAGC
  CTCTCAGGAG CCTTCTGGAA ATCACTGATG TGCTCACATT TTATGGAGGA AGAAGCTGAG
  GCTCGGAGCC ACAGATTATG GGGTCAGCAG AGCCTGCACT AAGGCGTTTT GCTCTATAGC
  ATAGCACAGA CCTCAGTGAT GTGTCAAAAG CATTATGGAA TTAGCAAGGC TGGGCTCTAC
  R
  TTCCGCCTAT CAAGAGACTG AGAGAGGAGA TGGTGGCTTT CTGGATTGTT TTTTCCAAGT
  GTACAGATCT CTCACAAAGG CGGGAATCTG GGCTTCTGGC TGGTATATAA GATATAGAAA
  ATAGAACTTC TGAGGATGTA GCAGTATTAA CTATCACAAG TTTGCCTTTT AGCCAAAGAG
  CCCACAACAC AGATAACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45878689	mCV24650767	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		A
ss51813722	NES14768558	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		A	A	A	A		A	A	G	A		A
ss133503077	ENSMUSSNP2639188	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
ss321892769	CHEV_6_108423228	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29929508					SNP	A	A	G	G	G	A	G	A	A	A	A	A	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51813722	NES14768558	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108450195 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	628 bp upstream
Gm44101	predicted gene, 44101	659 bp upstream
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636115	regulatory region 636115	1019 bp distal
Rr636116	regulatory region 636116	590 bp distal
Rr636117	regulatory region 636117	37 bp distal
Tssr58061	transcription start site region 58061	191 bp downstream
Tssr58062	transcription start site region 58062	152 bp downstream
Tssr58063	transcription start site region 58063	133 bp downstream
Tssr58064	transcription start site region 58064	106 bp downstream
Tssr62385	transcription start site region 62385	1570 bp upstream
Tssr62386	transcription start site region 62386	685 bp upstream