rs29926968 SNP Detail

Summary

• ID
  rs29926968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118621828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGCAACAG TAAAAGCCTC AGTGTGTCTG TGAAGGGCTG
  ATCTTATGGA ATATCATGGA ATCCACGGTT AACTGACACC AAGCAGAGAT AATATAAATC
  R
  TATTACATCA GGGTGCCACT TAGATATAAC TAATCATGGA GATTAGCGGC GTCTAATGGA
  GAAGGCATAA CCAAGCACGC AGCTGCTCAT GATCTACAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45876874	mCV27570597	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	A
ss133584712	ENSMUSSNP730750	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
ss321925738	CHEV_6_118594885	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29926968					SNP	A	A	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118621828 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637500	regulatory region 637500			78 bp proximal
Rr637501	regulatory region 637501			1692 bp proximal
Rr637502	regulatory region 637502			1970 bp proximal