rs29926918 SNP Detail

Summary

• ID
  rs29926918
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83417819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TACCCAAAAT ATCCTCACCC CCACCACCTC CTCTCCTCTC TTCAGCCATC TCCATGGTGA
  CAGCAGCATG ACTAATGACA CCCTATCAGC TTCAGACTCA GGAGTGCAAT TCTCCCTCCC
  CCTTACTGTC TTTCACCCCC ACTTCCCCGA GACAACGCAC CCCGGGGATT TCTGCAGATT
  GGAAGCAAAC CAACAGTGCC AGGGCCATTC TCCAGAGATT TCCAGAGGCA GGGGTGGGAA
  GTGGGTTGTA CGTCTTTAAA ACACACACAC ACACACACAC ACACACACAC ACACACACAC
  R
  CACGCACATG CGCACACACG CACAGCGCAC ACATATACAT ACAGTTCAAC AAACCAAACG
  CCAAACCCCA ACTGCACCCA AACCATCCAG CTGAGAAAGC AAAACGAATC CAAACAAAAC
  CCACACAGGC CTGAGAATTC ATTGGCCGCC CACACTCGCG CCGCCCCTCC CCCTCAGCTG
  CTGCTACACA CACAGTGGGA GATTAAGGGA TCACCAGAGG AGACCCTTTA TTTTTATCCA
  ATCCAGTCAA ACACTTCACC CCCACCGTGC AAGCCCACGT ATACACACAC GCACACATAC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45876680	mCV27581979	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs29926918					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83417819 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
B230319C09Rik	RIKEN cDNA B230319C09 gene			918 bp upstream
Cpgi17603	CpG island 17603			6 bp proximal
Rr632862	regulatory region 632862			within coordinates
Rr632863	regulatory region 632863			598 bp proximal
Rr632864	regulatory region 632864			828 bp proximal
Rr632865	regulatory region 632865			1011 bp proximal
Tet3	tet methylcytosine dioxygenase 3			Intron
				Noncoding-Transcript-Variant
Tssr61646	transcription start site region 61646			753 bp downstream
Tssr61647	transcription start site region 61647			775 bp downstream
Tssr61648	transcription start site region 61648			837 bp downstream
Tssr61649	transcription start site region 61649			1861 bp downstream