rs29926794 SNP Detail

Summary

• ID
  rs29926794
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116242855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCGT TTTTTTTTTT TTAAAGGAGC
  K
  TTAGCTATCT GCATAATTCA AGCTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45877368	mCV22289034	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29926794					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116242855 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17882	CpG island 17882			1258 bp distal
Gm44103	predicted gene, 44103			1799 bp upstream
Gm67200	predicted gene, 67200			1841 bp upstream
Rr399855	regulatory region 399855			1588 bp downstream
Rr637176	regulatory region 637176			1852 bp distal
Rr637177	regulatory region 637177			1619 bp distal
Rr637178	regulatory region 637178			1082 bp distal
Rr637179	regulatory region 637179			14 bp distal
Rr637180	regulatory region 637180			151 bp proximal
Rr637181	regulatory region 637181			1313 bp proximal
Tssr58359	transcription start site region 58359			1669 bp downstream
Tssr58360	transcription start site region 58360			1628 bp downstream
Tssr58361	transcription start site region 58361			1612 bp downstream
Tssr62562	transcription start site region 62562			1837 bp upstream
Zfand4	zinc finger, AN1-type domain 4			Intron
				mRNA-UTR