rs29925310 SNP Detail

Summary

• ID
  rs29925310
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165469855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGTACACA CACATATACC
  ACACACATAC ATACATTATA TATACATACA TACACACACA CCACATATAC ACACAGGCAC
  ACACACAGAC ACACATAGAC GCACATATAC ATGGGACACA CACCACATAC CAAACACCAC
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACTGCCCT TGTAATGACA
  Y
  GTCTCTTCCA GGGCTGAGAT GCGAATGAAC AGAACAGCGT GGTTACAATG GCTGTCTTGC
  CTGTTTGCTA CCTTTCAATG CTCTGCATTC TCTCTCAGGA ATAGGGGACC ATGACAGCAT
  GAACAGGAAG CCTCTTGGTG GCGATATGAT CTTGGGTTGG TGTCCTCCCA TCCTCAGGTG
  CCTGGCAGCC GCTCGCCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45377875	mCV22847030	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss320608515	CHEV_2_165453435	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29925310					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165469855 () rs orientation: forward

Symbol	Name	Function Class
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569965	regulatory region 569965	808 bp distal
Rr569966	regulatory region 569966	13 bp proximal
Rr569967	regulatory region 569967	127 bp proximal
Rr569968	regulatory region 569968	1972 bp proximal