rs29924396 SNP Detail

Summary

• ID
  rs29924396
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15395610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGGATTA AAGGCGTGTG
  CCACCACGCC CAGCTACATT TTTAATTATC TGAAATTTGA AAGTGTTTTT GTTTGAGGTG
  GATTAGTGAA TATATCAAAA TGAATTCACT TTGATAGTTT CTAAAATAAA TCTAACTGGG
  AATGTATACA GGAAAGTCAT TGTCTTTTGT TGCCAATATT ACATTGTGTG AGATAACTTC
  S
  CACCATAGTG TTTCTGCTTA TAGTTCTGTC TTCTTTTTTA AACTGTGCTT CCATAAGAAA
  CATCCAGCTA TATTTTATAA CTTAATTCCA CTTGCTTAGG CACATCACTT CCAAGTCAGA
  TCTTGTCAAA TATTTACATA AAGTGTATAA TCCAATAATT TCTAAAAAAG AAAAGTTGTT
  TTTAAAATCT GAAGATTAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45877729	mCV23982010	ABI	CRAMUS_MOUSE	f	SNP	G	G	C					C		C
ss60866331	NES15981636	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C		C	C	C	G		C	C	C	C		C
ss133005952	ENSMUSSNP6344281	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C							C
ss321751771	CHEV_6_15345611	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29924396					SNP	G	G	C	C	C	C	C	C	C	C	C	G	G	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60866331	NES15981636	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15395610 () rs orientation: forward

Symbol	Name	Function Class
Foxp2	forkhead box P2	Intron
Rr626663	regulatory region 626663	1877 bp proximal
Tssr54997	transcription start site region 54997	877 bp downstream