rs29922212 SNP Detail

Summary

• ID
  rs29922212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18434914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGG CAACTTCTTC ACAGGGTCAG
  Y
  GCTTTCTGTC ACTACATCTG TCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	WSB/EiJ
ss45876137	mCV23958956	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T		T
ss51250483	NES13802223	PERLEGEN	MM_PANEL2	f	SNP			T		C		T
ss133034778	ENSMUSSNP2047967	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	WSB/EiJ
rs29922212					SNP	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51250483	NES13802223	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18434914 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Gm40356	predicted gene, 40356			527 bp upstream
Gm67618	predicted gene, 67618			122 bp upstream
Rr626922	regulatory region 626922			within coordinates
Rr626923	regulatory region 626923			152 bp distal
Rr626924	regulatory region 626924			1594 bp proximal