rs29921996 SNP Detail

Summary

• ID
  rs29921996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93289881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTC GGGGAACCAA AATCTACCCC
  Y
  TGTGGGAATC TTGTGCCCAA ATGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45377445	mCV23858135	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss146943938	ENSMUSSNP922383	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320395967	CHEV_2_93299693	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29921996					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93289881 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd82	CD82 antigen			Intron
				Noncoding-Transcript-Variant
Gm10804	predicted gene 10804			within coordinates
Rr367239	regulatory region 367239			340 bp downstream
Rr561205	regulatory region 561205			1592 bp distal
Rr561206	regulatory region 561206			within coordinates
Rr561207	regulatory region 561207			968 bp proximal
Tssr18996	transcription start site region 18996			335 bp upstream
Tssr18997	transcription start site region 18997			1825 bp upstream
Tssr25291	transcription start site region 25291			745 bp upstream
Tssr25292	transcription start site region 25292			708 bp upstream