rs29920761 SNP Detail

Summary

• ID
  rs29920761
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:7846189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTGTGCA CACGATATTG
  TGTGCTCTAA GCATTGTATA GCATTTCTGC CAGCTGTAGT ATATATTTTT GTCCAGTTTA
  AATGAATATA AGGTTTGAAG TTACCAAACA GTTAACTCTT TTCACCATAT GTTCAGTAAA
  ACTGACTTAG GAAGGCAAGT ATGACTCACT GAAAAGTCAG CATTAGTGGA CAACTAACTT
  Y
  AGTGTTTCAG ATTTTCTTGA AATTTATGTT TTCCTCTATC TTTTTACTCA GGACTCAGCA
  GTTTACAAAT GCTTTGTGGT CATTTCCCAC TTAAACTCCC TCTCCCTACA TTGTGCTCTT
  AAAAAAAAAA TCAGCCTACA GTTGTGGATA ACTTTAATAT CAAGCAGTTT AAAAGTACAT
  ATAATGAGTT AATGTTTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45874474	mCV24778256	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss132955885	ENSMUSSNP5692978	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29920761					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7846189 () rs orientation: forward

Symbol	Name	Function Class
C1galt1	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	Intron
Cpgi17149	CpG island 17149	766 bp distal
Rr399558	regulatory region 399558	1464 bp downstream
Rr399559	regulatory region 399559	597 bp upstream
Rr626324	regulatory region 626324	1337 bp distal
Rr626325	regulatory region 626325	1612 bp distal
Rr626326	regulatory region 626326	within coordinates
Rr626327	regulatory region 626327	612 bp proximal
Rr626328	regulatory region 626328	1368 bp proximal
Tssr54889	transcription start site region 54889	1512 bp downstream
Tssr54890	transcription start site region 54890	1386 bp downstream
Tssr54891	transcription start site region 54891	1330 bp downstream
Tssr54892	transcription start site region 54892	890 bp downstream
Tssr54893	transcription start site region 54893	860 bp downstream
Tssr54894	transcription start site region 54894	788 bp upstream