rs29920420 SNP Detail

Summary

• ID
  rs29920420
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17629821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCCTTGAT TAAAGACATT TATTGTGGCC AATCCCACGC
  ACTTCATAAC TTTCAGATTT CTTTTTCACT ACGATTAACA CAAATACATT TAGCATTTAT
  K
  TTGTGTACAT AAGATATTGG GATACCTTGA TACACGCCTT AAATTACATG ACTAAGCAAG
  TGTTCCCCTC CCCCCAAGCT CCCTGCCCCT CCCCCCTTT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45876016	mCV23971749	ABI	CRAMUS_MOUSE	f	SNP		T					T		G
ss47814320	NES11716613	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		G	G	T	T		T	T		T
ss321755906	CHEV_6_17579822	CHEVERUD	SCREENING_POP	f	SNP												T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29920420					SNP	T	T	T	T	T	T	T	G	G	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814320	NES11716613	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17629821 () rs orientation: forward

Symbol	Name	Function Class
Rr626820	regulatory region 626820	423 bp distal
Rr626821	regulatory region 626821	within coordinates
Rr626822	regulatory region 626822	1887 bp proximal