GAACTCTGAG AATGTCTTAA GTCAAAGTGC AAGGAAAAGG AATGAACCGA AATGCAAATT TCTTCCTGCT TGAATACAAA AGCTCTGAGT CACTTCAGTC AGTAAGAATG GCTTTAAAAC ACTAAACTGG CTGGAGATCA TTAAGTGATT CTGTGTAGCA ATCGGTCCAA AAGAACACAG CGTGTGCACA CAGAGATGTA M TCCACTGTCA ACTCAGAAGC TCTGCTGCTG AGAGACCTCA TCACCCCTCT TAGAAACGGC CATCAAACGA CAAGGTGAAA AGTTAGAGAA CTTTTCTCAA AAATGTTGAG TAAACACGGA ATCAATTTTC TAGTTGTTTG AAGACATATT TCTAACGTCA CTACGGGGTA TCTTTTTGCC TCGGAGTAAC TAAGGAAAAA M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
---|---|---|---|---|---|---|---|---|---|
ss45378385 | mCV22743518 | ABI | CRAMUS_MOUSE | f | SNP | C | A | A | A |
ss146789712 | ENSMUSSNP614562 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | A | A | |
SNP Consensus Information | |||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
||||
rs29917864 | SNP | C | A | A | A |
Location: Chr2:79957367 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi11847 | CpG island 11847 | 1935 bp proximal | ||||||
Pde1a | phosphodiesterase 1A, calmodulin-dependent | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr373421 | regulatory region 373421 | within coordinates | ||||||
Rr560060 | regulatory region 560060 | within coordinates | ||||||
Rr560061 | regulatory region 560061 | 1906 bp proximal | ||||||
Tssr24917 | transcription start site region 24917 | 1917 bp downstream | ||||||
Tssr24918 | transcription start site region 24918 | 1990 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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