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rs29917864 SNP Detail
Summary
  • ID
    rs29917864
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr2:79957367 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAACTCTGAG AATGTCTTAA
    GTCAAAGTGC AAGGAAAAGG AATGAACCGA AATGCAAATT TCTTCCTGCT TGAATACAAA
    AGCTCTGAGT CACTTCAGTC AGTAAGAATG GCTTTAAAAC ACTAAACTGG CTGGAGATCA
    TTAAGTGATT CTGTGTAGCA ATCGGTCCAA AAGAACACAG CGTGTGCACA CAGAGATGTA
    M
    TCCACTGTCA ACTCAGAAGC TCTGCTGCTG AGAGACCTCA TCACCCCTCT TAGAAACGGC
    CATCAAACGA CAAGGTGAAA AGTTAGAGAA CTTTTCTCAA AAATGTTGAG TAAACACGGA
    ATCAATTTTC TAGTTGTTTG AAGACATATT TCTAACGTCA CTACGGGGTA TCTTTTTGCC
    TCGGAGTAAC TAAGGAAAAA                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
ss45378385 mCV22743518 ABI CRAMUS_MOUSE f SNP C A A A
ss146789712 ENSMUSSNP614562 ENSEMBL ENSEMBL_Sanger f SNP C A A
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
rs29917864 SNP C A A A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:79957367 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11847 CpG island 11847 1935 bp proximal
Pde1a phosphodiesterase 1A, calmodulin-dependent Intron
Noncoding-Transcript-Variant
Rr373421 regulatory region 373421 within coordinates
Rr560060 regulatory region 560060 within coordinates
Rr560061 regulatory region 560061 1906 bp proximal
Tssr24917 transcription start site region 24917 1917 bp downstream
Tssr24918 transcription start site region 24918 1990 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory