rs29917864 SNP Detail

Summary

• ID
  rs29917864
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:79957367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTCTGAG AATGTCTTAA
  GTCAAAGTGC AAGGAAAAGG AATGAACCGA AATGCAAATT TCTTCCTGCT TGAATACAAA
  AGCTCTGAGT CACTTCAGTC AGTAAGAATG GCTTTAAAAC ACTAAACTGG CTGGAGATCA
  TTAAGTGATT CTGTGTAGCA ATCGGTCCAA AAGAACACAG CGTGTGCACA CAGAGATGTA
  M
  TCCACTGTCA ACTCAGAAGC TCTGCTGCTG AGAGACCTCA TCACCCCTCT TAGAAACGGC
  CATCAAACGA CAAGGTGAAA AGTTAGAGAA CTTTTCTCAA AAATGTTGAG TAAACACGGA
  ATCAATTTTC TAGTTGTTTG AAGACATATT TCTAACGTCA CTACGGGGTA TCTTTTTGCC
  TCGGAGTAAC TAAGGAAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45378385	mCV22743518	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss146789712	ENSMUSSNP614562	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29917864					SNP	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79957367 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11847	CpG island 11847			1935 bp proximal
Pde1a	phosphodiesterase 1A, calmodulin-dependent			Intron
				Noncoding-Transcript-Variant
Rr373421	regulatory region 373421			within coordinates
Rr560060	regulatory region 560060			within coordinates
Rr560061	regulatory region 560061			1906 bp proximal
Tssr24917	transcription start site region 24917			1917 bp downstream
Tssr24918	transcription start site region 24918			1990 bp downstream