rs29916148 SNP Detail

Summary

• ID
  rs29916148
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56491587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGA TGAGGCGGTA TATTTAAGAA
  Y
  TTAAGGTAGA TTTAACATGG AGATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss39132106	mCV22866887	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					T	T
ss61809879	NES17750223	PERLEGEN	MM_PANEL2	f	SNP	T			T	C	T	C		T	T	T	C	T	T	C
ss149043921	ENSMUSSNP5962088	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29916148					SNP	T	T	C	T	C	T	C	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61809879	NES17750223	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56491587 () rs orientation: forward

Symbol	Name	Function Class
Gm24716	predicted gene, 24716	1246 bp upstream
Gm32003	predicted gene, 32003	1989 bp upstream
Rr480711	regulatory region 480711	857 bp distal
Rr480712	regulatory region 480712	610 bp proximal