rs29913095 SNP Detail

Summary

• ID
  rs29913095
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119451020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGC CTGGTATTTT GACCCACATA
  R
  TGGAAGAAGA GAATTAACTG TACAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45376886	mCV22554043	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss147337206	ENSMUSSNP4314330	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320476351	CHEV_2_119446275	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29913095					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119451020 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12123	CpG island 12123			1610 bp distal
Nusap1	nucleolar and spindle associated protein 1			Intron
				Noncoding-Transcript-Variant
Rr397233	regulatory region 397233			1783 bp downstream
Rr563552	regulatory region 563552			1812 bp distal
Rr563553	regulatory region 563553			within coordinates
Rr563554	regulatory region 563554			391 bp proximal
Tssr19645	transcription start site region 19645			1802 bp downstream