rs29912503 SNP Detail

Summary

• ID
  rs29912503
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:69761947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACGCGGAC AACAAAAAAC
  AGGCTCAGCA GGTTGTGTTT GCATGGTCAT GTATGCATAC AGACATGTGT GTGGCAATAA
  TAATCAAAGA AAGAGTCGAT CAGTTCAGAG GAGGGGCTGA AGGGAGGGAA GGGAAAGAGG
  AAAATGATGG CATTCTATTG TAACGTAAAA TATATAAAAA TAAATGAAAT TTTAAGAAAT
  R
  GAGACCAGCT CATCTTTAAG AAGGAAGTTT AACAGAGACC ACTCTCTTGG CCAGTTCTGC
  TGCTGTCTTT GTCGTGTCAT ACACAACATT TTCAATGGGC GAGAGGGATC TTTTCTAACT
  TACATTTGTA CACTTAAGAA AACTAGCGGC AACAAGACCT GAACACAAGA ACTTGATGGG
  GTTTTTTTTT TGTTTGTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39628150	mCV22676839	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss147387942	ENSMUSSNP6396325	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29912503					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:69761947 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr540232	regulatory region 540232			1489 bp proximal
Tcf4	transcription factor 4			Intron
				Noncoding-Transcript-Variant