rs29910154 SNP Detail

Summary

• ID
  rs29910154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84218734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAACCTCCGT AATCACCAGC TGAAAACAGT CCCTGGGAAC
  TGTTGTCTGG ACAGCAAGTG GTGGTCTCTC CCCGGAGCAG AACGGTATGT CCTGGCTCAC
  Y
  CTGTGATTGG TCACAGTTAC AAGACTTGCA ATGTCAAGTC GAATTATGTA TAAATATATA
  TATATGGTTT TTGTTTTTTT TTTTTTTTTG GTTTTTTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45375403	mCV24735355	ABI	CRAMUS_MOUSE	f	SNP	T		T	C
ss146830348	ENSMUSSNP5696806	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss320371279	CHEV_2_84228547	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29910154					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84218734 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Calcrl	calcitonin receptor-like			Intron
				Noncoding-Transcript-Variant
Gm74802	predicted gene, 74802			within coordinates
Rr560245	regulatory region 560245			814 bp distal
Rr560246	regulatory region 560246			478 bp distal
Rr560247	regulatory region 560247			within coordinates
Tssr24971	transcription start site region 24971			1198 bp upstream
Tssr24972	transcription start site region 24972			1308 bp downstream
Tssr24973	transcription start site region 24973			1365 bp downstream
Tssr24974	transcription start site region 24974			1406 bp downstream