rs29909576 SNP Detail

Summary

• ID
  rs29909576
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152659388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAAAACA AGGTGAAATG
  GCTGAGACTA CAGACTGAGG AAGAAGACTT GCACAGCAGG CTTAATGCCC TGGGTTCAAC
  CTCCAGCATA CAGGGTAGGA AAAGAACAAA GACGCCTTCA TGTTCCATAT CTTCCGAACA
  GGTAATAGCA CTGAAAACTG TCTACTATAG GTCAGGCAGA AAGCTGAATG GTCTACACTC
  K
  ACACAGTCAT TCTCTCAAAA AATAGTGGCC AAATGTTACC AAATTCCAAA CATTCTGCTA
  GATGCTGATA ATAAAGGAAA ACTTTCAAGA CAAAAGCAAA TACTCTGTGA GCTTAAGTTT
  CCCTGAATTA GACAGTAAAC ATGTAAACAT GGGTAGCCTC TGGGGAAGTG AGACCTGAAT
  GATAAAGAGA GTCCTAATCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45374728	mCV27575755	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
ss147974911	ENSMUSSNP3034010	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29909576					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152659388 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l1	BCL2-like 1			Intron
				Noncoding-Transcript-Variant
Rr1128	regulatory region 1128			within coordinates
Rr367334	regulatory region 367334			1001 bp downstream
Rr367335	regulatory region 367335			792 bp downstream
Rr567481	regulatory region 567481			1245 bp proximal