rs29908882 SNP Detail

Summary

• ID
  rs29908882
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127597647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CACGTGAAGG ATTTGGCTCC AAGGGAAAGT GTATTTTGTT AGGATGCAGC TGTGCTCTCC
  GCTGCTCTAC TGCTCGCTTC GTTTACGGAA AGAAGGGTAA TAAGGTTCTA CATGCCACTG
  CAAGGCCCGG GAGTGCTGCA GACACGGCCC AATGGATAAG AACACTGGCT GCTCTTGCAG
  AGGACACAGG TCCAGTTCCC AGCACCCACA TGGTAGCTCA CAACCATCTG TAACATCTGA
  CGGCCTCTTC TGACCTCCAC AGGCACCAAG CATGCAATGC AGTTCAGAGA CATACATGCA
  W
  TAAAAAAAAA AAAAAAGTCT TAAAAAAGAC CTATCTATAC TATGGAGGTG GTGGAACCAT
  TTAGGGGTGG GGCCTTCAGG GACACATTCA GGCATTCAGG CACTGGGCTG TGCCTATGGA
  GATACAGGGA CCCATGCCCC TCTGTGCTGC TCCCCAGCCC CTGAGGGATG GAAGGCTTCT
  TTACCACATG CTTCGCCATG GTGTTCTTTG TTAACAGAGA CCCAAAGCAA TAGGGCCAAC
  GGGCCAGAGA CTGAACCCTG TGGAAATGTA GACCCAAATA AACCCTCCCT CCTTTAGCTT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45374474	mCV22279932	ABI	CRAMUS_MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs29908882					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127597647 () rs orientation: forward

Symbol	Name	Function Class
Nphp1	nephronophthisis 1 (juvenile) homolog (human)	Intron
Rr564596	regulatory region 564596	1439 bp proximal
Tssr26143	transcription start site region 26143	9 bp upstream