rs29906269 SNP Detail

Summary

• ID
  rs29906269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152662236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTTGTGA AAAGGGCTAA
  TAATAGTACC TACTGCATTG AGCGAGCGCG GCTGTGAGAA TGGAATCAAT TAGTACTTGT
  AGTGCATACT GAACAATGCC TGGCACAGAG TAAGCATTCA ATAAATGTTA GGTGCTATTA
  ATAGCAATGT TAACAATAAT ATTAATCACC AGGCGGAATT AAGAGGAGGG GTTGCTTAGT
  Y
  CTGGGACATG GGCATCCCAT GGAATAATTC CAAAGAAGTG CCTGGACATG TGTCTGGAAG
  CAAGCCTTCA GCCTGTAAAA AGGGCATGAG GCTGGGCTCC TAAGTCCCAG TCCCACTGAC
  CCTCTGGGGA GGGGAGTCAG GTTCCTCTGA AGGGACACTG TGTTCCCAGT GGTTGTGTTC
  CAGGCGCTGC CTGACTCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45374791	mCV27575790	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29906269					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152662236 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l1	BCL2-like 1			Intron
				Noncoding-Transcript-Variant
Rr374094	regulatory region 374094			within coordinates
Rr567481	regulatory region 567481			1302 bp distal
Rr567482	regulatory region 567482			within coordinates
Tssr20836	transcription start site region 20836			952 bp upstream