rs29904208 SNP Detail

Summary

• ID
  rs29904208
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34285458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTTCAG CCAAGCATTC
  CCTCATGAGC CTGCCTTAGT TTTTCACTCC TGTGTCCACT TTAATGGAAA GTTCCTTCAC
  GAGCTTGCCC CAGCAAAACA CCATTCGACA CAACTGACTT TCCAGAGAAC CCTTTAAGTT
  TCCACTTCAA AGATGATATC TTTATCTTGT TCTGTAAATG TGCCCTGTAT TAATAATAAC
  Y
  GTAAATGCCA AATCATGGGG TGAGAATCCT CGATGAAAGG TGGCACCATC TGGATGTTTG
  TGCTTTCTTG GTTGATGGGA ACTTTCGTGA ATTCTAAAGA CGACAATGGA TCTTAATTAA
  GTGTTCAAAT CCCCCCCTGT GTCACATGAT TGTGGAAATC CTGAGTGTGC CTAGTTAATG
  TTGAAATCAA TGGTAATCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49577694	NES12874700	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	T		T	T	C	T
ss134764592	ENSMUSSNP1778962	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T									C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29904208					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49577694	NES12874700	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34285458 () rs orientation: forward

Symbol	Name	Function Class
Rr575112	regulatory region 575112	463 bp proximal
Rr575113	regulatory region 575113	745 bp proximal