rs29904204 SNP Detail

Summary

• ID
  rs29904204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34285723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTGGTTG ATGGGAACTT
  TCGTGAATTC TAAAGACGAC AATGGATCTT AATTAAGTGT TCAAATCCCC CCCTGTGTCA
  CATGATTGTG GAAATCCTGA GTGTGCCTAG TTAATGTTGA AATCAATGGT AATCTGTAGG
  TGCTCCAATT GGTTGTTCAA TATGCAGAGT AGTGGGCACT GTGAACATGC TTTAAACATG
  R
  AGCCCAAAAC CCAAGGACAA GATGGTTTTG TGCAACTGCA CTTCTTATGA ATATGTTCCT
  GTTAAATATT TCAACCACTG AGAGCTATCT TGATATTATC TTAGAGTTCC AAAATCCCTT
  CCCACACACT GTAGTCAATA CGCCATGCTT TAACGCACCA TTTCAGAAGG CTATATAACA
  CAATCAAACT GCTTATAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49577690	NES12874704	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	G		A	A	G	A
ss134764595	ENSMUSSNP2026557	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29904204					SNP	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49577690	NES12874704	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34285723 () rs orientation: forward

Symbol	Name	Function Class
Rr575112	regulatory region 575112	198 bp proximal
Rr575113	regulatory region 575113	480 bp proximal