rs29903368 SNP Detail

Summary

• ID
  rs29903368
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34286048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACTGTAG TCAATACGCC
  ATGCTTTAAC GCACCATTTC AGAAGGCTAT ATAACACAAT CAAACTGCTT ATAAAGGCTT
  CCTCCTAGAA CCAGCATGCA TCGTAAGGGT GTGAATTCCA GCTTCTTGGT CCCAAGGAAA
  ATGATGACGT CATCGAGCTG AAAGTACCTT TAGCTTCTCA GCTTGTACAA AAAGGAACTT
  Y
  CAAAGCAAAA CCCTGAGTCA AATCGATGTT TAAGGAATGT AGTTTTAGTC AAAGTGATGA
  TGATGACAAC AATGATGAAG ATGAAGACAA AGATGATATA TGGCTGATGG TTCTCAAAGC
  TTGCTTTTGT ATTTTAAAAC TTAGATTTAT TTTTGTTTCC AGCAGGTGTC ACTGTAGGCA
  AATAAAAAAA AATGACAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49577684	NES12874710	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T		C	C	T		C	C	T	C
ss134764607	ENSMUSSNP385564	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29903368					SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49577684	NES12874710	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34286048 () rs orientation: forward

Symbol	Name	Function Class
Rr575112	regulatory region 575112	within coordinates
Rr575113	regulatory region 575113	155 bp proximal