rs29903070 SNP Detail

Summary

• ID
  rs29903070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33971698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTGTGAA AGACACATTT
  TTCTCATTCA ACAAGCAAAC ATCTTCAGAG ATTTGGCTAG ACTAGCCCTC CTTGCCTCAG
  ACAGTCAACT GATGAGCTAC CCTGCCAATA TCTGGCTGTG TTTGGGGTCC AGGTAGATTT
  GGGGGATGGG TGATCAGATG AACTCACCCA CGAAGGCATG TGCATGTGGA GGCCAGAAGT
  Y
  AGCATTGGGT GCCTTCCTCG ACCTCTCTCA CCTGAACCCA GAGCTAGGCT GCCTGGTAAC
  CCTATCTCTA TATCTATAGC ACTTATCTTT TGTGTCAGGG TTTTCCATTG AAAAGAGCTA
  TAGGCATACC GTTGTAGAAG CTGGACTGGC ATTTTTTTGC CATGTATAAT TCTAAAGATA
  GTGTTGGCCT TTCTTTATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45511928	mCV24295679	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss49579108	NES12880094	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		T	T	T	T	T	C	T	T
ss134760306	ENSMUSSNP2067025	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29903070					SNP	C	C	T	T	T	C	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49579108	NES12880094	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33971698 () rs orientation: forward

Symbol	Name	Function Class
Rr575082	regulatory region 575082	1582 bp distal
Rr575083	regulatory region 575083	938 bp proximal
Rr575084	regulatory region 575084	1290 bp proximal
Rr575085	regulatory region 575085	1406 bp proximal