rs29903069 SNP Detail

Summary

• ID
  rs29903069
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33971880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTGGAGG CCAGAAGTTA
  GCATTGGGTG CCTTCCTCGA CCTCTCTCAC CTGAACCCAG AGCTAGGCTG CCTGGTAACC
  CTATCTCTAT ATCTATAGCA CTTATCTTTT GTGTCAGGGT TTTCCATTGA AAAGAGCTAT
  AGGCATACCG TTGTAGAAGC TGGACTGGCA TTTTTTTGCC ATGTATAATT CTAAAGATAG
  Y
  GTTGGCCTTT CTTTATGCCC ACACACTTAC CCTTCAGTGC TCAATATCAA ACCCAAGATC
  TCCTCCTTCA CACACCTGTC TGATGCTCTG TCACAGAGCA TGTGCGAGCC TTCAGCCTTG
  TTTCATGGAA GAAGTAAAAC TGGCCCCCTC TGGGTTTCCA CTGGGCCCCT TCCTTCACCC
  CTTCTGGAAG GAAACCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49579107	NES12880095	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29903069					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49579107	NES12880095	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33971880 () rs orientation: forward

Symbol	Name	Function Class
Rr575082	regulatory region 575082	1764 bp distal
Rr575083	regulatory region 575083	756 bp proximal
Rr575084	regulatory region 575084	1108 bp proximal
Rr575085	regulatory region 575085	1224 bp proximal