rs29903065 SNP Detail

Summary

• ID
  rs29903065
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33972114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAAAACTGG CCCCCTCTGG GTTTCCACTG GGCCCCTTCC
  TTCACCCCTT CTGGAAGGAA ACCTGCCTAC TTGACCTTCA GCCCGATACA TAATTACTTT
  Y
  TTCTTTTTTA CTAAAATAGC CATAGCACAT GTAATCTTCA CACTTCCCCT TGGTTCATTT
  GTAAAATAGA GAAAACTAAA ACATATAATG TGTAACTAAT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49579103	NES12880099	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29903065					SNP	T	C	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49579103	NES12880099	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33972114 () rs orientation: forward

Symbol	Name	Function Class
Rr575082	regulatory region 575082	1998 bp distal
Rr575083	regulatory region 575083	522 bp proximal
Rr575084	regulatory region 575084	874 bp proximal
Rr575085	regulatory region 575085	990 bp proximal