rs29902481 SNP Detail

Summary

• ID
  rs29902481
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34286518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCCTGTG GCTTGTGACA
  TTGGTGTCTT TGCACCGTTT CTGTTTCTCT GGCCACATGC CCTGTCGGAA GATACCACTC
  AGCTAAATGG ACAGAGACAG CAGAGGGACA GGCAGAGCTC AGTGTGGGGA GGGATGACTC
  TCATTCGGCA GCAGAGAGTC CTGAAATCTT GCAATGTCTA AATGAAGTCA GTACATGAGT
  Y
  CGTTAGCTTT TGAAGAATTG CTTCCAAAGG TCTTAATCAT GTCTGACTAT TAGGGGTTCT
  GTACCAACTT TGTTACCAAA GAAAAGCTCT ACCAGGAAGG ACGGTCTTCA AAACCTCCCA
  GCAAGCACTT CCAGCAAGCG CTCAGCCGTA GCCAGGGACA GGGAAGGGAA AGCATGGCAG
  AAAGGACTAA CTGATTGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49577677	NES12874719	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29902481					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49577677	NES12874719	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34286518 () rs orientation: forward

Symbol	Name	Function Class
Rr575112	regulatory region 575112	7 bp distal
Rr575113	regulatory region 575113	294 bp distal